References

Relevant internet resources

http://edamontology.org/: This is the main information site about the EDAM ontology, the ontology of bioscientific data analysis and data management. It is a comprehensive ontology of well-established, familiar concepts that are prevalent within bioscientific data analysis and data management (including computational biology, bioinformatics, and bioimage informatics).

https://schema.org/: Schema.org is a collaborative, community activity with a mission to create, maintain, and promote schemas for structured data on the Internet, on web pages, in email messages, and beyond. On this web site, you can find

https://bioschemas.org/: The homepage of the Bioschemas community. Bioschemas aims to improve the Findability on the Web of life sciences resources such as datasets, software, and training materials. Here you can find all the information about the three Bioschemas Profiles implemented in this protocol at https://bioschemas.org/profiles as well as various tutorials at https://bioschemas.org/tutorials.

https://validator.schema.org: This is the site where you can easily validate web sites which have been marked up with structured data as e.g. a JSON-LD object.

ELIXIR-GOBLET Train the Trainer: This is the github repository ELIXIR-EXCELERATE-TtT hosted in the TrainTheTrainer github organisation.

TeSS widgets. This is the github repository for TeSS widgets where several implementation scenarios are documented.

Publications

Beard, N., Bacall, F., Nenadic, A., Thurston, M., Goble, C. A., Sansone, S.-A., & Attwood, T. K. (2020). TeSS: A platform for discovering life-science training opportunities. Bioinformatics, 36(10), 3290–3291.

Garcia, L., Batut, B., Burke, M. L., Kuzak, M., Psomopoulos, F., Arcila, R., Attwood, T. K., Beard, N., Carvalho-Silva, D., Dimopoulos, A. C., Angel, V. D. del, Dumontier, M., Gurwitz, K. T., Krause, R., McQuilton, P., Pera, L. L., Morgan, S. L., Rauste, P., Via, A., … Palagi, P. M. (2020). Ten simple rules for making training materials FAIR. PLOS Computational Biology, 16(5), e1007854.

Castro, L., Palagi, P. M., Beard, N., Bioschemas Training Profiles Group Members, ELIXIR FAIR Training Focus Group, The GOBLET Foundation, Attwood, T., Brazas, M. (2022). Bioschemas Training Profiles: A set of specifications for standardizing training information to facilitate the discovery of training programs and resources

Gray AJ, Goble C, Jiménez RC, The Bioschemas Community Bioschemas: from potato salad to protein annotation. International Semantic Web Conference; Berlin. 2017. Accessed 2019 Mar 11. Available here

Guha R.V., Dan Brickley, Steve MacBeth (2015) Schema.org: Evolution of Structured Data on the Web: Big data makes common schemas even more necessary. Queue, 13(9), 10–37.

Ison, J., Kalas, M., Jonassen, I., Bolser, D., Uludag, M., McWilliam, H., Malone, J., Lopez, R., Pettifer, S., & Rice, P. (2013). EDAM: An ontology of bioinformatics operations, types of data and identifiers, topics and formats. Bioinformatics, 29(10), 1325–1332.

Jupp S. et al. (2015) A new Ontology Lookup Service at EMBL-EBI. In: Malone, J. et al. (eds.) Proceedings of SWAT4LS International Conference 2015

the FAIRsharing Community, Sansone, S.-A., McQuilton, P., Rocca-Serra, P., Gonzalez-Beltran, A., Izzo, M., Lister, A. L., & Thurston, M. (2019). FAIRsharing as a community approach to standards, repositories and policies. Nature Biotechnology, 37(4), 358–367.

Via, A., Palagi, P.M., Lindvall, J.M., Tractenberg, R.E., Attwood, T.K., The GOBLET Foundation et al. (2020). Course design: Considerations for trainers – a Professional Guide. F1000Res.

Whetzel, P. L., Noy, N. F., Shah, N. H., Alexander, P. R., Nyulas, C., Tudorache, T., & Musen, M. A. (2011). BioPortal: Enhanced functionality via new Web services from the National Center for Biomedical Ontology to access and use ontologies in software applications. Nucleic Acids Research, 39(suppl), W541–W545.